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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1973 1
1979 1
1981 1
1982 1
1989 1
1993 2
1994 2
1997 2
1998 1
1999 3
2000 2
2001 2
2002 1
2003 1
2004 2
2005 4
2006 6
2007 3
2008 5
2009 8
2010 12
2011 15
2012 14
2013 9
2014 16
2015 17
2016 14
2017 19
2018 13
2019 19
2020 28
2021 25
2022 26
2023 33
2024 16

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292 results

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Page 1
Genetics of multiple sclerosis: lessons from polygenicity.
Goris A, Vandebergh M, McCauley JL, Saarela J, Cotsapas C. Goris A, et al. Lancet Neurol. 2022 Sep;21(9):830-842. doi: 10.1016/S1474-4422(22)00255-1. Lancet Neurol. 2022. PMID: 35963264 Review.
They are located throughout the genome, including 32 independent variants in the MHC and one on the X chromosome. Most variants are non-coding and seem to act through cell-specific effects on gene expression and splicing. ...
They are located throughout the genome, including 32 independent variants in the MHC and one on the X chromosome. Most variants are non-c …
GROMACS: fast, flexible, and free.
Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ. Van Der Spoel D, et al. J Comput Chem. 2005 Dec;26(16):1701-18. doi: 10.1002/jcc.20291. J Comput Chem. 2005. PMID: 16211538
By careful optimization of neighbor searching and of inner loop performance, GROMACS is a very fast program for molecular dynamics simulation. It does not have a force field of its own, but is compatible with GROMOS, OPLS, AMBER, and ENCAD force fields. In addition, it can …
By careful optimization of neighbor searching and of inner loop performance, GROMACS is a very fast program for molecular dynamics simulatio …
NanoLC-EI-MS: Perspectives in Biochemical Analysis.
Pereira Dos Santos NG, Maciel EVS, Vargas Medina DA, Lanças FM. Pereira Dos Santos NG, et al. Int J Mol Sci. 2023 Jul 21;24(14):11746. doi: 10.3390/ijms241411746. Int J Mol Sci. 2023. PMID: 37511506 Free PMC article. Review.
Although LC-MS with atmospheric pressure ionization (API) sources is the primary technique used in modern bioanalytical studies, electron ionization mass spectrometry (EI-MS) can provide some substantial advantages over it. ...However, to fully utilize EI-MS for heavy and …
Although LC-MS with atmospheric pressure ionization (API) sources is the primary technique used in modern bioanalytical studies, elec …
Gabor Convolutional Networks.
Luan S, Chen C, Zhang B, Han J, Liu J. Luan S, et al. IEEE Trans Image Process. 2018 Sep;27(9):4357-4366. doi: 10.1109/TIP.2018.2835143. IEEE Trans Image Process. 2018. PMID: 29870353 Free article.
., the convolution operator, based on Gabor filters, GCNs can be easily implemented and are readily compatible with any popular deep learning architecture. We carry out extensive experiments to demonstrate the promising performance of our GCNs framework, and the results sh …
., the convolution operator, based on Gabor filters, GCNs can be easily implemented and are readily compatible with any popular deep …
Pollock: fishing for cell states.
Storrs EP, Zhou DC, Wendl MC, Wyczalkowski MA, Karpova A, Wang LB, Li Y, Southard-Smith A, Jayasinghe RG, Yao L, Liu R, Wu Y, Terekhanova NV, Zhu H, Herndon JM, Puram S, Chen F, Gillanders WE, Fields RC, Ding L. Storrs EP, et al. Bioinform Adv. 2022 May 13;2(1):vbac028. doi: 10.1093/bioadv/vbac028. eCollection 2022. Bioinform Adv. 2022. PMID: 35603231 Free PMC article.
While there are established algorithms that address cell classification, they are limited in terms of cross platform compatibility, reliance on the availability of a reference dataset and classification interpretability. ...Additionally, it demonstrates utility in immune p …
While there are established algorithms that address cell classification, they are limited in terms of cross platform compatibility, r …
YaHS: yet another Hi-C scaffolding tool.
Zhou C, McCarthy SA, Durbin R. Zhou C, et al. Bioinformatics. 2023 Jan 1;39(1):btac808. doi: 10.1093/bioinformatics/btac808. Bioinformatics. 2023. PMID: 36525368 Free PMC article.
It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible with similar tools and provides assembly results in multiple formats, thereby enabling rapid, robust and scalable construction of high-q …
It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible …
INTERCAAT: identifying interface residues between macromolecules.
Grudman S, Fajardo JE, Fiser A. Grudman S, et al. Bioinformatics. 2022 Jan 3;38(2):554-555. doi: 10.1093/bioinformatics/btab596. Bioinformatics. 2022. PMID: 34499117 Free PMC article.
Interacting atoms are then classified and interactions are filtered based on compatibility. INTERCAAT implements an adaptive atom classification method; therefore, it can explore interfaces between a variety macromolecules. AVAILABILITY AND IMPLEMENTATION: Source …
Interacting atoms are then classified and interactions are filtered based on compatibility. INTERCAAT implements an adaptive atom cla …
HoCoRT: host contamination removal tool.
Rumbavicius I, Rounge TB, Rognes T. Rumbavicius I, et al. BMC Bioinformatics. 2023 Oct 2;24(1):371. doi: 10.1186/s12859-023-05492-w. BMC Bioinformatics. 2023. PMID: 37784008 Free PMC article.
In comparison to the dedicated DeconSeq tool, HoCoRT using Bowtie2 in end-to-end mode proved considerably faster and slightly more accurate. HoCoRT is available as a Bioconda package, and the source code can be accessed at https://github.com/ignasrum/hocort along wi …
In comparison to the dedicated DeconSeq tool, HoCoRT using Bowtie2 in end-to-end mode proved considerably faster and slightly more accurate. …
Ambivalent covariance models.
Janssen S, Giegerich R. Janssen S, et al. BMC Bioinformatics. 2015 May 28;16:178. doi: 10.1186/s12859-015-0569-1. BMC Bioinformatics. 2015. PMID: 26017195 Free PMC article.
RESULTS: We propose an extension to the fundamental architecture of covariance models to allow for several, compatible consensus structures. The resulting models are called ambivalent covariance models. Evaluation on several RFAM families shows that coalescence of structur …
RESULTS: We propose an extension to the fundamental architecture of covariance models to allow for several, compatible consensus stru …
Logomaker: beautiful sequence logos in Python.
Tareen A, Kinney JB. Tareen A, et al. Bioinformatics. 2020 Apr 1;36(7):2272-2274. doi: 10.1093/bioinformatics/btz921. Bioinformatics. 2020. PMID: 31821414 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: Logomaker can be installed using the pip package manager and is compatible with both Python 2.7 and Python 3.6. Documentation is provided at http://logomaker.readthedocs.io; source code is available at http://github.com/jbkinn …
AVAILABILITY AND IMPLEMENTATION: Logomaker can be installed using the pip package manager and is compatible with both Python 2.7 and …
292 results